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ML Research Scientist

San Francisco, California, United States

Pay
Pay not listed
Work setting
On-site — work setting source
Work setup in the employer’s listing: On-site
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Employment
Full-time — employment source
Employment type in the employer’s listing: FullTime
From the employer’s posting
Apply at toposbio

What you’ll work on

Full posting
  • Develop generative models for protein conformational ensembles trained on simulation and experimental data

  • Design scalable training pipelines for high-throughput experimentation

  • Build novel ML architectures for ensemble-based affinity prediction and generative chemistry

From the employer’s posting
What you will do Develop generative models for protein conformational ensembles trained on simulation and experimental data Build novel ML architectures for ensemble-based affinity prediction and generative chemistry
Adapt methods from research literature to disordered protein targets Design scalable training pipelines for high-throughput experimentation Collaborate with computational and experimental scientists to validate models against biophysical data
Develop generative models for protein conformational ensembles trained on simulation and experimental data Build novel ML architectures for ensemble-based affinity prediction and generative chemistry Adapt methods from research literature to disordered protein targets

What you’ll bring

All qualifications

Core experience

  • Deep understanding of modern generative models with application to the sciences
  • Experience with molecular simulation and protein modeling
Qualification wording
Deep understanding of modern generative models with application to the sciences
Experience with molecular simulation and protein modeling
Education & alternatives
Preferred - MS or PhD in machine learning with application to computational science - Strong publication record

Posting record

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Live
First seen by us
Oct 18, 2026 · today
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Employer says posted
Sep 30, 2026

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Job description

View original posting ↗

Topos Bio

Topos Bio is developing computational methods to drug intrinsically disordered proteins.

We're seeking a research scientist to develop and optimize ML methods that bridge simulation, protein modeling, and small molecule design. This role requires both strong machine learning foundations and the ability to work at the interface of computational biology, structural modeling, and chemistry.

What you will do

  • Develop generative models for protein conformational ensembles trained on simulation and experimental data

  • Build novel ML architectures for ensemble-based affinity prediction and generative chemistry

  • Adapt methods from research literature to disordered protein targets

  • Design scalable training pipelines for high-throughput experimentation

  • Collaborate with computational and experimental scientists to validate models against biophysical data

What we are looking for

  • Strong foundation in machine learning theory and implementation

  • Deep understanding of modern generative models with application to the sciences

  • Background in computational sciences involving biology and chemistry

Preferred

  • MS or PhD in machine learning with application to computational science

  • Strong publication record

  • Experience with molecular simulation and protein modeling

Source details

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Location & working pattern

San Francisco, California, United States

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